Peer Review Journal Publications
2026

1. M. Rogalski, P. Zdańkowski, M. Heto, J. Mierzejewska, M. Lenarcik, Z. Li, J. Sun, C. Zuo, M. Trusiak,
"Doubling the field of view and eliminating the replica overlap problem in common-path shearing quantitative phase imaging",
Journal of Physics: Photonics, vol. 8, p. 015018 (2026).
DOI: 10.1088/2515-7647/ae236c

2. T. Xiong, Y. Shu, R. Ye, M. Trusiak, M. Kujawinska, J. Sun, Y. Fan, C. Zuo,
"Single-shot quantitative differential phase contrast microscopy based on support-domain constraint",
APL Photonics, vol. 11, no. 4, p. 046107 (2026).
DOI: 10.1063/5.0314921

3. K. Kalinowski, M. Rogalski, P. Arcab, E. Wdowiak, P. Zdańkowski, M. Trusiak,
"Hybrid spectral-spatial domain registration for nanometric tracking in digital in-line holographic microscopy",
Optics Letters, vol. 51, pp. 3241–3244 (2026).
DOI: 10.1364/OL.599613

4. A. C. Patil, M. Trusiak, F. Xia, L. Cao, C. Manzo, G. Volpe,
"Beyond the black box: towards an open and citable software ecosystem in photonics",
Journal of Physics: Photonics, vol. 8, p. 020201 (2026).
DOI: 10.1088/2515-7647/ae68cd

5. D. M. Suski, M. Cywińska, J. Winnik, et al.,
"Uncertainty-Aware Bayesian Computational Imaging for Single-Shot Widefield Interferometric Nanometrology",
Laser & Photonics Reviews, vol. 20, no. 12, p. e03158 (2026).
DOI: 10.1002/lpor.202503158

6. M. Krysa, A. Chwastowicz, M. Lenarcik, P. Matryba, P. Zdańkowski, M. Trusiak,
"A Reversible Clearing Strategy Enables Robust Label-Free Phase Imaging of Thick Tissues",
Laser & Photonics Reviews, p. e71514 (2026).
DOI: 10.1002/lpor.71514

7. M. Krysa, et al.,
"High Space-Bandwidth Product Label-Free Examination of iPSC-Derived Brain Organoids via Fourier Ptychographic Microscopy",
IEEE Journal of Selected Topics in Quantum Electronics, vol. 32, no. 4, pp. 1–12 (2026).
DOI: 10.1109/JSTQE.2025.3650095

8. P. Gocłowski, H. Mao, M. Trusiak, B. S. Ahluwalia, A. Ahmad,
"High-fidelity single-shot quantitative differential phase microscopy using a pseudothermal Sagnac interferometer",
Optics Letters, vol. 51, pp. 4127–4130 (2026).
DOI: 10.1364/OL.599071

9. Z. Li, Z. Zhang, Y. Fan, et al.,
"Learning to Self-Interfere: Zero-Shot Deconvolution Enables Replica-Free, Low-Coherence Common-Path Quantitative Phase Microscopy",
Laser & Photonics Reviews, p. e71702 (2026).
DOI: 10.1002/lpor.71702

10. B. Górski, M. Rogalski, E. Wdowiak, P. Arcab, K. Kalinowski, M. Trusiak,
"HoLLoApp: a reconstruction tool for high-throughput label-free complex-field imaging in lensless holographic microscopy",
Journal of Physics: Photonics, vol. 8, p. 036003 (2026).
DOI: 10.1088/2515-7647/ae8b49

11. J. Winnik, D. Suski, M. Heto, M. Lenarcik, M. Ziemczonok, M. Kołodziejczyk, M. Trusiak, P. Zdańkowski,
"OSI-flex: optimization-based shearing interferometry for joint phase and shear estimation using a flexible open-source framework",
Journal of Physics: Photonics, vol. 8, p. 015036 (2026).
DOI: 10.1088/2515-7647/ae3504

12. M. Cywińska, W. Forjasz, E. Wdowiak, M. Józwik, A. Styk, K. Patorski, M. Trusiak,
"DeepBessel: deep learning-based full-field vibration profilometry using single-shot time-averaged interference microscopy",
Optics and Lasers in Engineering, vol. 199, p. 109588 (2026).
DOI: 10.1016/j.optlaseng.2025.109588

13. E. Wdowiak, M. Józwik, M. Cywińska,
"Computational adaptive optics for interferometric microscopy based on Bayesian inference",
Optics and Lasers in Engineering, vol. 205, p. 109924 (2026).
DOI: 10.1016/j.optlaseng.2026.109924

14. J. Winnik, A. Walocha, W. D. Ogonowski, W. Forjasz, M. Rogalski, A. Rutkowska, M. Stefaniuk, J. A. Picazo Bueno, M. Cywińska, P. Arcab,
"YOSO: single-frame gerchberg-saxton phase retrieval with AI-based data augmentation for in-line holography",
J. Phys. Photonics (2026).
DOI: 10.1088/2515-7647/ae99bb
2025

1.Z. Tang, J. Winnik, and B. M. Hennelly,
“Optical diffraction tomography using a self-reference module”,
Biomedical Optics Express, vol. 16, no. 1, p. 57 (2025).
DOI: doi.org/10.1364/BOE.545296

2. M. Rogalski, P. Arcab, E. Wdowiak, J. Á. Picazo-Bueno, V. Micó, M. Józwik, M. Trusiak,
“Hybrid Iterating-Averaging Low Photon Budget Gabor Holographic Microscopy”,
ACS Photonics (2025).
DOI: doi.org/10.1021/acsphotonics.4c01863

3. M. Cywińska, M. Józwik, K. Patorski, A. Ahmad, B. Ahluwalia, B. Kemper, M. Trusiak,
"DeepQuadrature: universal convolutional neural network enlarging space–bandwidth product in single-shot fringe pattern optical metrology",
J. Phys. Photonics vol. 7 (2025).
DOI: 10.1088/2515-7647/adc219

4. Z. Li, Y. Shu, L. Lu, J. Sun, Q. Shen, P. Gao, P. Zdańkowski, M. Trusiak, M. Kujawinska, Q. Chen, C. Zuo,
"Fourier Holo-Ptychographic Microscopy: A Hybrid Digital Holography-Fourier Ptychography Approach to Synthetic-Aperture Quantitative Phase Microscopy",
ACS Photonics (2025).
DOI: doi.org/10.1021/acsphotonics.4c02010

5. K. Kalinowski, A. Chwastowicz, P. Arcab, M. Rogalski, W. Szymska, E. Wdowiak, J. Winnik, P. Zdańkowski, M. Józwik, P. Matryba, M. Trusiak,
"ClearAIM: dynamic quantitative label-free monitoring of tissue optical clearing",
Advanced Imaging (2025).
DOI: 10.3788/AI.2025.10022

6. P. Arcab, M. Rogalski, M. Marzejon, P. Rogujski, L. Stanaszek, M. Trusiak,
"Multi-culture label-free quantitative cell migration sensing with single-cell precision",
Biomedical Optics Express, vol. 16, pp. 222–234 (2025).
DOI: 10.1364/BOE.541010

7. Q. Shen, J. Sun, S. Zhou, Y. Fan, Z. Li, Q. Chen, M. Trusiak, M. Kujawinska, C. Zuo,
"Iterative Kramers–Kronig method for non-interferometric quantitative phase imaging: beyond the first-order Born and Rytov approximations",
Optics Letters, vol. 50, pp. 1144–1147 (2025).
DOI: 10.1364/OL.550726

8. P. Zdańkowski, J. Winnik, M. J. Marzejon, E. Wdowiak, W. Dudka, M. Józwik, M. Trusiak,
"Polarization Gratings Aided Common-Path Hilbert Holotomography for Label-Free Lipid Droplets Content Assay",
Laser & Photonics Reviews, vol. 19, p. 2401474 (2025).
DOI: 10.1002/lpor.202401474

9. R. Gao, J. Sun, Y. Fan, Y. Shu, M. Trusiak, Q. Chen, C. Zuo,
"Efficient misalignment correction method for dark-field aperture in reflective Fourier ptychographic microscopy",
APL Photonics, vol. 10, no. 10, p. 106124 (2025).
DOI: 10.1063/5.0297832

10. J. Winnik, P. Zdańkowski, M. Rogalski, M. J. Marzejon, E. Wdowiak, W. Dudka, M. Józwik, M. Trusiak,
"Gradient optical diffraction tomography",
Communications Physics, vol. 8, p. 510 (2025).
DOI: 10.1038/s42005-025-02416-3

11. E. Wdowiak, N. Spiller, T. Wang, C. Nourshargh, J. Mierzejewska, P. Zdańkowski, S. M. Morris, S. J. Elston, M. Trusiak, M. J. Booth,
"Speckle suppression in digital in-line holographic microscopy through liquid crystal dynamic scattering",
Optics Letters, vol. 50, pp. 7544–7547 (2025).
DOI: 10.1364/OL.577016

12. M. Rogalski, J. Martinez-Carranza, B. Górski, P. Arcab, M. Józwik, P. Zdańkowski, M. Sobień, M. Stefaniuk, S. Zhou, C. Zuo, M. Trusiak,
"Fourier ptychographic microscopy aided with transport of intensity equation for robust full phase spectrum reconstruction",
Photonics Research, vol. 13, pp. 3004–3017 (2025).
DOI: 10.1364/PRJ.569444

13. F. Edorna, F. D. Choque, G. Ferrari, et al.,
"Open-source sub-nanometer stabilization system for super-resolution fluorescence microscopy",
Light: Science & Applications, vol. 14, p. 385 (2025).
DOI: 10.1038/s41377-025-02022-6

14. P. Arcab, M. Rogalski, M. Trusiak, P. Zdańkowski,
"Two-step automated method for robust Fourier ptychographic microscopy LED misalignment calibration",
Optics and Lasers in Engineering, vol. 195, p. 109340 (2025).
DOI: 10.1016/j.optlaseng.2025.109340

15. W. Chen, Y. Liu, S. Feng, W. Yin, J. Qian, Y. Li, H. Zhang, M. Trusiak, M. Kujawinska, Q. Chen, C. Zuo,
"Dual-frequency angular-multiplexed fringe projection profilometry with deep learning: breaking hardware limits for ultra-high-speed 3D imaging",
Opto-Electronic Advances, vol. 8, no. 9, p. 250021 (2025).
DOI: 10.29026/oea.2025.250021

16. L. P. Lu, S. Zhou, Y. B. Jin, et al.,
"Physics-informed deep learning transport-of-intensity quantitative phase imaging: accurate phase retrieval under partially coherent illumination",
Intelligent Opto-Electronics, vol. 1, p. 250005 (2025).
DOI: 10.67704/ioe.2025.250005

17. E. Wdowiak, M. Józwik, M. J. Booth, P. Zdańkowski, M. Trusiak,
"Zernike-guided correction of phase errors in two-photon polymerization over extended printing areas",
Precision Engineering, vol. 96, pp. 182–191 (2025).
DOI: 10.1016/j.precisioneng.2025.06.013

18. J. Winnik, D. Suski, M. Trusiak,
"Phase retrieval methods for lensless digital holographic microscopy and their robustness to data errors",
Proceedings of SPIE, vol. 13508, p. 1350809 (2025).
DOI: 10.1117/12.3052590

19. M. Trusiak,
"Rolling into the genome: linking mutations to cellular structure through label-free holographic cytometry",
Light: Science & Applications, vol. 14, p. 368 (2025).
DOI: 10.1038/s41377-025-02053-z
2024
2023
2022
2021
- 1. M. Rogalski, P. Zdankowski, M. Trusiak, "FPM app: an open-source MATLAB application for simple and intuitive Fourier ptychographic reconstruction," Bioinformatics 37(20), 3695–3696 (2021)
- 2. J. Á. Picazo-Bueno, M. Trusiak, J. García, and V. Micó, "Spatially multiplexed interferometric microscopy: principles and applications to biomedical imaging," Journal of Physics: Photonics 3(3), 034005 (2021).
- 3. P. Zdańkowski, J. Winnik, K. Patorski, P. Gocłowski, M. Ziemczonok, M. Józwik, M. Kujawińska, and M. Trusiak, "Common-path intrinsically achromatic optical diffraction tomography," Biomed. Opt. Express 12, 4219-4234 (2021).
- 4. J. Winnik, D. Suski, P. Zdańkowski, L. Stanaszek, V. Micó, and M. Trusiak, "Versatile optimization-based speed-up method for autofocusing in digital holographic microscopy," Opt. Express 29, 33297-33311 (2021).
- 5. P. Gocłowski, M. Cywińska, A. Ahmad, B. Ahluwalia, and M. Trusiak, "Single-shot fringe pattern phase retrieval using improved period-guided bidimensional empirical mode decomposition and Hilbert transform," Opt. Express 29, 31632-31649 (2021).
- 6. K. Patorski, M. Cywińska, P. Zdańkowski, and M. Trusiak, "Moiré microstructure generated binary amplitude gratings for suppression of high diffraction orders", Optics and Lasers in Engineering 147, 106731 (2021)
- 7. M. Cywińska, F. Brzeski, W. Krajnik, K. Patorski, C. Zuo, M. Trusiak, “DeepDensity: Convolutional neural network based estimation of local fringe pattern density,” Optics and Lasers in Engineering 145, 106675 (2021).
- 8. M. Trusiak, "Fringe analysis: single-shot or two-frames? Quantitative phase imaging answers," Optics Express 29(12), 18192-18211 (2021).
2020
- 1. N. T. Shaked, V. Mico, M. Trusiak, A. Kus, and S. K. Mirsky, “Off-axis digital holographic multiplexing for rapid wave front acquisition and processing,” Advances in Optics and Photonics, 12 (3), 556-611 (2020).
- 2. M. Trusiak, J.A. Pizaco-Bueno, P. Zdańkowski, V. Mico, „DarkFocus: numerical autofocusing in digital in-line holographic microscopy using variance of computational dark-field gradient,” Optics and Lasers in Engineering Volume 134, 106195 (2020).
- 3. L. Saunoriene, P. Palevicius, G. Laukaitis, M. Trusiak, K. Patorski, M. Ragulskis, “Diagnostics measure for roller bearings based on variable moiré gratings,” Optics and Lasers in Engineering Volume 133, 106137 (2020).
- 4. P. Gocłowski, M. Trusiak, A. Ahmad, A. Styk, V. Mico, B. S. Ahluwalia, and K. Patorski, "Automatic fringe pattern enhancement using truly adaptive period-guided bidimensional empirical mode decomposition," Opt. Express 28, 6277-6293 (2020).
- 5. K. Patorski, P. Zdankowski, M. Trusiak, “Grating deployed total-shear 3-beam interference microscopy with reduced temporal coherence” Opt. Express 28, 6893-6908 (2020).
- 6. M. Cywińska, M. Trusiak, A. Styk, and K. Patorski, "Full-field vibration profilometry using time-averaged interference microscopy aided by variational analysis," Opt. Express 28(1), 435-450 (2020)
- 7. P. Zdankowski, M. Trusiak, D. McGloin, J. R. Swedlow, “Numerically enhanced adaptive optics-based 3D STED microscopy for deep-tissue super-resolved imaging,” ACS Nano 14(1), 394-405 (2020).
- 8. M. Sanz, M. Trusiak, J. Garcia, V. Mico, “Variable zoom digital in-line holographic microscopy,” Optics and Lasers in Engineering 127, 105939 (2020).
2019
- 1. Y. Fan, J. Sun, Q. Chen, X. Pan, M. Trusiak, C. Zuo, “Single-shot isotropic quantitative phase microscopy based on color-multiplexed differential phase contrast,” APL Photonics 4 (12), 121301 2019
- 2. W. Yin, Q. Chen, S. Feng, T. Tao, L. Huang, M. Trusiak, A. Asundi, C. Zuo, “Temporal phase unwrapping using deep learning,” Scientific Reports vol. 9, 20175 (2019)
- 3. M. Trusiak, J. Á. Picazo-Bueno, K. Patorski, P. Zdankowski, V. Micó, "Single-shot two-frame π-shifted spatially multiplexed interference phase microscopy," Journal of Biomedical Optics 24 (9), 096004 (2019).
- 4. M. Cywińska, M. Trusiak, K. Patorski, "Automatized fringe pattern preprocessing using unsupervised variational image decomposition," Optics Express 27 (16), 22542-22562 (2019).
- 5. M. Cywińska, M. Trusiak, C. Zuo, K. Patorski, „Enhancing single-shot fringe pattern phase demodulation using advanced variational image decomposition,” Journal of Optics (2019).
- 6. J. Á. Picazo-Bueno, M. Trusiak, V. Micó, "Single-shot slightly off-axis digital holographic microscopy with add-on module based on beamsplitter cube," Optics Express 27 (4), 5655-5669 (2019).
- 7. W. Yin, S. Feng, T. Tao, L. Huang, M. Trusiak, Q. Chen, C. Zuo, “High-speed 3D shape measurement using the optimized composite fringe patterns and stereo-assisted structured light system,” Optics Express 27 (3), 2411-2431 (2019).
- 8. K. Patorski, Ł. Służewski, P. Zdańkowski, M. Cywińska, M. Trusiak, “Three-level transmittance 2D grating with reduced spectrum and its self-imaging,” Optics Express 27 (3), 1854-1868 (2019).
2018
- 1. M. Trusiak, A. Styk, K. Patorski, “Hilbert–Huang transform based advanced Bessel fringe generation and demodulation for full-field vibration studies of specular reflection micro-objects,” Optics and Lasers in Engineering 110, 100-112 (2018) [Special Issue “Progress in Photomechanics”]
- 2. K. Patorski, Ł. Służewski, M. Trusiak, “5-beam grating interferometry for extended phase gradient sensing,” Optics Express 26 (21), 26872-26887 (2018)
- 3. J. Á. Picazo-Bueno, M. Trusiak, J. García, K. Patorski, V. Micó, "Hilbert–Huang single-shot spatially multiplexed interferometric microscopy," Optics Letters 43 (5), 1007-1010 (2018).
2017
- 1. D. Saide, M. Trusiak, K. Patorski, "Evaluation of adaptively enhanced two-shot fringe pattern phase and amplitude demodulation methods," Appl. Opt. 56 (19), 5489-5500 (2017).
- 2. K. Patorski, Ł. Służewski, M. Trusiak, K. Pokorski, "Generation of phase edge singularities by coplanar three-beam interference and their detection," Optics Express 25 (3), 2432-2445 (2017).
2016
- 1. M. Trusiak, V. Mico, J. Garcia, and K. Patorski, "Quantitative phase imaging by single-shot Hilbert–Huang phase microscopy," Optics Letters 41 (18), 4344-4347 (2016).
- 2. F. Liu, J. Wang, Y. Wu, F. Wu, M. Trusiak, K. Patorski, Y. Wan, Q. Chen, and X. Hou, "Simultaneous extraction of phase and phase shift from two interferograms using Lissajous figure and ellipse fitting technology with Hilbert–Huang prefiltering," Journal of Optics 18 (10), 105604 (2016).
- 3. M. Trusiak, L. Sluzewski, and K. Patorski, "Single shot fringe pattern phase demodulation using Hilbert-Huang transform aided by the principal component analysis," Optics Express 24 (4), 4221-4238 (2016).
2015
- 1. K. Patorski, M. Trusiak, K. Pokorski, “Diffraction grating three-beam interferometry without self-imaging regime contrast modulations,” Optics Letters 40 (6), 1089-1092 (2015).
- 2. M. Trusiak and K. Patorski, “Two-shot fringe pattern phase-amplitude demodulation using Gram-Schmidt orthonormalization with Hilbert-Huang pre-filtering,” Optics Express 23 (4), 4672-4690 (2015).
2014
- 1. K. Patorski, M. Trusiak, and T. Tkaczyk, “Optically-sectioned two-shot structured illumination microscopy with Hilbert-Huang processing,” Optics Express 22 (28), 9517-9527 (2014). It was also published in Virtual Journal for Biomedical Optics Vol. 9, Iss. 6, June 2014.
- 2. K. Patorski, K. Pokorski, and M. Trusiak, “Circular–linear grating Talbot interferometry with moiré Fresnel imaging for beam collimation,” Optics Letters 39 (2), 291-294 (2014).
- 3. M. Trusiak, M. Wielgus, and K. Patorski, “Advanced processing of optical fringe patterns by automated selective reconstruction and enhanced fast empirical mode decomposition,” Optics and Lasers in Engineering 52 (1), 230-240 (2014).
2013
- 1. M. Trusiak, K. Patorski, and K. Pokorski, “Hilbert-Huang processing for single-exposure two-dimensional grating interferometry,” Optics Express 21 (23), 28359-28379 (2013).
- 2. K. Patorski, M. Trusiak, “Highly contrasted Bessel fringe minima visualization for time-averaged vibration profilometry using Hilbert transform two-frame processing,” Optics Express 21 (14), 16863-16881 (2013).























