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Peer Review Journal Publications ​

2026

1. M. Rogalski, P. Zdańkowski, M. Heto, J. Mierzejewska, M. Lenarcik, Z. Li, J. Sun, C. Zuo, M. Trusiak,
"Doubling the field of view and eliminating the replica overlap problem in common-path shearing quantitative phase imaging",
Journal of Physics: Photonics, vol. 8, p. 015018 (2026).
DOI: 10.1088/2515-7647/ae236c

2. T. Xiong, Y. Shu, R. Ye, M. Trusiak, M. Kujawinska, J. Sun, Y. Fan, C. Zuo,
"Single-shot quantitative differential phase contrast microscopy based on support-domain constraint",
APL Photonics, vol. 11, no. 4, p. 046107 (2026).
DOI: 10.1063/5.0314921

3. K. Kalinowski, M. Rogalski, P. Arcab, E. Wdowiak, P. Zdańkowski, M. Trusiak,
"Hybrid spectral-spatial domain registration for nanometric tracking in digital in-line holographic microscopy",
Optics Letters, vol. 51, pp. 3241–3244 (2026).
DOI: 10.1364/OL.599613

4. A. C. Patil, M. Trusiak, F. Xia, L. Cao, C. Manzo, G. Volpe,
"Beyond the black box: towards an open and citable software ecosystem in photonics",
Journal of Physics: Photonics, vol. 8, p. 020201 (2026).
DOI: 10.1088/2515-7647/ae68cd

5. D. M. Suski, M. Cywińska, J. Winnik, et al.,
"Uncertainty-Aware Bayesian Computational Imaging for Single-Shot Widefield Interferometric Nanometrology",
Laser & Photonics Reviews, vol. 20, no. 12, p. e03158 (2026).
DOI: 10.1002/lpor.202503158

6. M. Krysa, A. Chwastowicz, M. Lenarcik, P. Matryba, P. Zdańkowski, M. Trusiak,
"A Reversible Clearing Strategy Enables Robust Label-Free Phase Imaging of Thick Tissues",
Laser & Photonics Reviews, p. e71514 (2026).
DOI: 10.1002/lpor.71514

7. M. Krysa, et al.,
"High Space-Bandwidth Product Label-Free Examination of iPSC-Derived Brain Organoids via Fourier Ptychographic Microscopy",
IEEE Journal of Selected Topics in Quantum Electronics, vol. 32, no. 4, pp. 1–12 (2026).
DOI: 10.1109/JSTQE.2025.3650095

8. P. Gocłowski, H. Mao, M. Trusiak, B. S. Ahluwalia, A. Ahmad,
"High-fidelity single-shot quantitative differential phase microscopy using a pseudothermal Sagnac interferometer",
Optics Letters, vol. 51, pp. 4127–4130 (2026).
DOI: 10.1364/OL.599071

9. Z. Li, Z. Zhang, Y. Fan, et al.,
"Learning to Self-Interfere: Zero-Shot Deconvolution Enables Replica-Free, Low-Coherence Common-Path Quantitative Phase Microscopy",
Laser & Photonics Reviews, p. e71702 (2026).
DOI: 10.1002/lpor.71702

10. B. Górski, M. Rogalski, E. Wdowiak, P. Arcab, K. Kalinowski, M. Trusiak,
"HoLLoApp: a reconstruction tool for high-throughput label-free complex-field imaging in lensless holographic microscopy",
Journal of Physics: Photonics, vol. 8, p. 036003 (2026).
DOI: 10.1088/2515-7647/ae8b49

11. J. Winnik, D. Suski, M. Heto, M. Lenarcik, M. Ziemczonok, M. Kołodziejczyk, M. Trusiak, P. Zdańkowski,
"OSI-flex: optimization-based shearing interferometry for joint phase and shear estimation using a flexible open-source framework",
Journal of Physics: Photonics, vol. 8, p. 015036 (2026).
DOI: 10.1088/2515-7647/ae3504

12. M. Cywińska, W. Forjasz, E. Wdowiak, M. Józwik, A. Styk, K. Patorski, M. Trusiak,
"DeepBessel: deep learning-based full-field vibration profilometry using single-shot time-averaged interference microscopy",
Optics and Lasers in Engineering, vol. 199, p. 109588 (2026).
DOI: 10.1016/j.optlaseng.2025.109588

13. E. Wdowiak, M. Józwik, M. Cywińska,
"Computational adaptive optics for interferometric microscopy based on Bayesian inference",
Optics and Lasers in Engineering, vol. 205, p. 109924 (2026).
DOI: 10.1016/j.optlaseng.2026.109924

14. J. Winnik, A. Walocha, W. D. Ogonowski, W. Forjasz, M. Rogalski, A. Rutkowska, M. Stefaniuk, J. A. Picazo Bueno, M. Cywińska, P. Arcab,
"YOSO: single-frame gerchberg-saxton phase retrieval with AI-based data augmentation for in-line holography",
J. Phys. Photonics (2026).
DOI: 10.1088/2515-7647/ae99bb

2025

1.Z. Tang, J. Winnik, and B. M. Hennelly,
“Optical diffraction tomography using a self-reference module”,
Biomedical Optics Express, vol. 16, no. 1, p. 57 (2025).
DOI: doi.org/10.1364/BOE.545296

2. M. Rogalski, P. Arcab, E. Wdowiak, J. Á. Picazo-Bueno, V. Micó, M. Józwik, M. Trusiak,
“Hybrid Iterating-Averaging Low Photon Budget Gabor Holographic Microscopy”,
ACS Photonics (2025).
DOI: doi.org/10.1021/acsphotonics.4c01863

3. M. Cywińska, M. Józwik, K. Patorski, A. Ahmad, B. Ahluwalia, B. Kemper, M. Trusiak,
"DeepQuadrature: universal convolutional neural network enlarging space–bandwidth product in single-shot fringe pattern optical metrology",
J. Phys. Photonics vol. 7 (2025).
DOI: 10.1088/2515-7647/adc219

4. Z. Li, Y. Shu, L. Lu, J. Sun, Q. Shen, P. Gao, P. Zdańkowski, M. Trusiak, M. Kujawinska, Q. Chen, C. Zuo,
"Fourier Holo-Ptychographic Microscopy: A Hybrid Digital Holography-Fourier Ptychography Approach to Synthetic-Aperture Quantitative Phase Microscopy",
ACS Photonics (2025).
DOI: doi.org/10.1021/acsphotonics.4c02010

5. K. Kalinowski, A. Chwastowicz, P. Arcab, M. Rogalski, W. Szymska, E. Wdowiak, J. Winnik, P. Zdańkowski, M. Józwik, P. Matryba, M. Trusiak,
"ClearAIM: dynamic quantitative label-free monitoring of tissue optical clearing",
Advanced Imaging (2025).
DOI: 10.3788/AI.2025.10022

6. P. Arcab, M. Rogalski, M. Marzejon, P. Rogujski, L. Stanaszek, M. Trusiak,
"Multi-culture label-free quantitative cell migration sensing with single-cell precision",
Biomedical Optics Express, vol. 16, pp. 222–234 (2025).
DOI: 10.1364/BOE.541010

7. Q. Shen, J. Sun, S. Zhou, Y. Fan, Z. Li, Q. Chen, M. Trusiak, M. Kujawinska, C. Zuo,
"Iterative Kramers–Kronig method for non-interferometric quantitative phase imaging: beyond the first-order Born and Rytov approximations",
Optics Letters, vol. 50, pp. 1144–1147 (2025).
DOI: 10.1364/OL.550726

8. P. Zdańkowski, J. Winnik, M. J. Marzejon, E. Wdowiak, W. Dudka, M. Józwik, M. Trusiak,
"Polarization Gratings Aided Common-Path Hilbert Holotomography for Label-Free Lipid Droplets Content Assay",
Laser & Photonics Reviews, vol. 19, p. 2401474 (2025).
DOI: 10.1002/lpor.202401474

9. R. Gao, J. Sun, Y. Fan, Y. Shu, M. Trusiak, Q. Chen, C. Zuo,
"Efficient misalignment correction method for dark-field aperture in reflective Fourier ptychographic microscopy",
APL Photonics, vol. 10, no. 10, p. 106124 (2025).
DOI: 10.1063/5.0297832

10. J. Winnik, P. Zdańkowski, M. Rogalski, M. J. Marzejon, E. Wdowiak, W. Dudka, M. Józwik, M. Trusiak,
"Gradient optical diffraction tomography",
Communications Physics, vol. 8, p. 510 (2025).
DOI: 10.1038/s42005-025-02416-3

11. E. Wdowiak, N. Spiller, T. Wang, C. Nourshargh, J. Mierzejewska, P. Zdańkowski, S. M. Morris, S. J. Elston, M. Trusiak, M. J. Booth,
"Speckle suppression in digital in-line holographic microscopy through liquid crystal dynamic scattering",
Optics Letters, vol. 50, pp. 7544–7547 (2025).
DOI: 10.1364/OL.577016

12. M. Rogalski, J. Martinez-Carranza, B. Górski, P. Arcab, M. Józwik, P. Zdańkowski, M. Sobień, M. Stefaniuk, S. Zhou, C. Zuo, M. Trusiak,
"Fourier ptychographic microscopy aided with transport of intensity equation for robust full phase spectrum reconstruction",
Photonics Research, vol. 13, pp. 3004–3017 (2025).
DOI: 10.1364/PRJ.569444

13. F. Edorna, F. D. Choque, G. Ferrari, et al.,
"Open-source sub-nanometer stabilization system for super-resolution fluorescence microscopy",
Light: Science & Applications, vol. 14, p. 385 (2025).
DOI: 10.1038/s41377-025-02022-6

14. P. Arcab, M. Rogalski, M. Trusiak, P. Zdańkowski,
"Two-step automated method for robust Fourier ptychographic microscopy LED misalignment calibration",
Optics and Lasers in Engineering, vol. 195, p. 109340 (2025).
DOI: 10.1016/j.optlaseng.2025.109340

15. W. Chen, Y. Liu, S. Feng, W. Yin, J. Qian, Y. Li, H. Zhang, M. Trusiak, M. Kujawinska, Q. Chen, C. Zuo,
"Dual-frequency angular-multiplexed fringe projection profilometry with deep learning: breaking hardware limits for ultra-high-speed 3D imaging",
Opto-Electronic Advances, vol. 8, no. 9, p. 250021 (2025).
DOI: 10.29026/oea.2025.250021

16. L. P. Lu, S. Zhou, Y. B. Jin, et al.,
"Physics-informed deep learning transport-of-intensity quantitative phase imaging: accurate phase retrieval under partially coherent illumination",
Intelligent Opto-Electronics, vol. 1, p. 250005 (2025).
DOI: 10.67704/ioe.2025.250005

17. E. Wdowiak, M. Józwik, M. J. Booth, P. Zdańkowski, M. Trusiak,
"Zernike-guided correction of phase errors in two-photon polymerization over extended printing areas",
Precision Engineering, vol. 96, pp. 182–191 (2025).
DOI: 10.1016/j.precisioneng.2025.06.013

18. J. Winnik, D. Suski, M. Trusiak,
"Phase retrieval methods for lensless digital holographic microscopy and their robustness to data errors",
Proceedings of SPIE, vol. 13508, p. 1350809 (2025).
DOI: 10.1117/12.3052590

19. M. Trusiak,
"Rolling into the genome: linking mutations to cellular structure through label-free holographic cytometry",
Light: Science & Applications, vol. 14, p. 368 (2025).
DOI: 10.1038/s41377-025-02053-z

2024

1.M. Rogalski, P. Arcab, L. Stanaszek, V. Micó, C. Zuo, and M. Trusiak, “Physics-driven universal twin-image removal network for digital in-line holographic microscopy,” Opt. Express, vol. 32, no. 1, p. 742, (2024).

2. P. Arcab, M. Rogalski, and M. Trusiak, "Single-shot experimental-numerical twin-image removal in lensless digital holographic microscopy," Opt. Lasers Eng. 172, 107878 (2024).

3. L. Lu, S. Zhou, Y. Shu, Y. Jin, J. Sun, R. Ye, M. Trusiak, P. Gao, and C. Zuo, “High-throughput transport-of-intensity quantitative phase imaging with aberration correction,” Light: Advanced Manufacturing, 5(45), (2024).

4. M. J. Lopera, M. Rogalski, P. Arcab, M. Stefaniuk, Y. Nie, H. Ottevaere, C. Trujillo, M. Trusiak, Lensless Mueller holographic microscopy with robust noise reduction for multiplane polarization imaging, Optics & Laser Technology 181, 111936 (2025).

5. E. Wdowiak, M. Rogalski, P. Arcab, P. Zdańkowski, M. Józwik, M. Trusiak, “Quantitative phase imaging verification in large field-of-view lensless holographic microscopy via two-photon 3D printing,” Scientific Reports volume 14, Article number: 23611 (2024).

6. J. Rosen, M. Trusiak, et al. Roadmap on computational methods in optical imaging and holography [invited]. Appl. Phys. B 130, 166 (2024).

7. J. Winnik, D. Suski, P. Arcab, M. Rogalski, M. Trusiak, "Phase retrieval via conjugate gradient minimization in double-plane lensless holographic microscopy," Opt. Express 32, 28666-28680 (2024).

8. Y. Chen, X., Wu, L., Lu, M. Trusiak et al., “Pixel-super-resolved lens-free quantitative phase microscopy with partially coherent illumination,” npj Nanophoton. 1, 15 (2024).

9. M. J. Lopera, M. Trusiak, A. Doblas, H. Ottevaere, and C. Trujillo, “Mueller-Gabor holographic microscopy,” Opt. Lasers Eng. 178, 108191 (2024).

10. A. Ahmad, P. Gocłowski, V. Dubey, M. Trusiak, and B. S. Ahluwalia, “High space–time bandwidth product imaging in low coherence quantitative phase microscopy,” Sci. Rep. 14, 9191 (2024).

11. A. Espinosa-Momox, B. Norton, M. Cywinska, B. Evans, J. Vivero-Escoto, and R. Porras-Aguilar, "Single-shot quantitative phase microscopy: a multi-functional tool for cell analysis," Biomed. Opt. Express 15, 5999-6009 (2024).

2023

1. M. Cywińska, K. Szumigaj, M. Kołodziej, K. Patorski, V. Micó, S. Feng, C. Zuo, M. Trusiak, "DeepVID: deep-learning accelerated variational image decomposition model tailored to fringe pattern filtration," J. Opt. 25 045702 (2023).

2. V. Micó, M. Rogalski, J. Á. Picazo-Bueno, and M. Trusiak, "Single-shot wavelength-multiplexed phase microscopy under Gabor regime in a regular microscope embodiment," Sci. Rep. 13, 4257 (2023).

3. Z. Li, J. Sun, Y. Fan, Y. Jin, Q. Shen, M. Trusiak, M. Cywińska, P. Gao, Q. Chen, C. Zuo, "Deep learning assisted variational Hilbert quantitative phase imaging" Opto-Electron Sci 2, 220023 (2023).

4. M. Trusiak, M. Kujawińska, "Deep learning enabled single-shot absolute phase recovery in high-speed composite fringe pattern profilometry of separated objects," Opto-Electron Adv 6, 230172 (2023).

2022

1. M. Rogalski, M. Cywińska, A. Ahmad, K. Patorski, V. Micó, B. S. Ahluwalia and M. Trusiak, "Hilbert phase microscopy based on pseudo thermal illumination in Linnik configuration," Opt. Lett. 47(22), 5793-5796 (2022).

2. M. Cywińska, M. Rogalski, F. Brzeski, K. Patorski, and M. Trusiak, "DeepOrientation: convolutional neural network for fringe pattern orientation map estimation," Opt. Express 30(23), 42283-42299 (2022).

3. P. Arcab, B. Mirecki, M. Stefaniuk, M. Pawłowska, and M. Trusiak, "Experimental optimization of lensless digital holographic microscopy with rotating-diffuser-based coherent noise reduction," Opt. Express 30(24), 42810-42828 (2022).

4. B. Mirecki, M. Rogalski, P. Arcab, P. Rogujski, L. Stanaszek, M. Józwik, and M. Trusiak, "Low-intensity illumination for lensless digital holographic microscopy with minimized sample interaction," Biomed. Opt. Express 13, 5667-5682 (2022).

5. M. Rogalski, J. A. Picazo-Bueno, J. Winnik, P. Zdańkowski, V. Micó, and M. Trusiak, "Accurate automatic object 4D tracking in digital in-line holographic microscopy based on computationally rendered dark fields," Scientific Reports 12, 12909 (2022).

6. W. Lipke, J. Winnik, and M. Trusiak, "Numerical analysis of the effect of reduced temporal coherence in quantitative phase microscopy and tomography," Opt. Express 30(12) 21241-21257 (2022).

7. M. Rogalski, M. Pielach, A. Cicone, P. Zdankowski, L. Stanaszek, K. Drela, K. Patorski, B. Łukomska, and M. Trusiak, "Tailoring 2D fast iterative filtering algorithm for low-contrast optical fringe pattern preprocessing," Opt. Lasers Eng. 155, 107069 (2022).

8. P. Zdańkowski, L. F. Lopez, G. P. Acuna, and F. D. Stefani, "Nanometer Resolution Imaging and Tracking of Single Fluorophores by Sequential Structured Illumination”, ACS Photonics Article ASAP, 2330-4022 (2022).

2021

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2018